Stephen Turner's ideas
Docker containers with embedded R packages and domain-specific tools
R packages are collections of functions, documentations, tests, sample data, and dependency declarations, which come together to promote modularity, reproducibility, and adherence to good coding practices. Containerization using technologies such... continue reading
Converting Snakemake workflows to Nextflow with nf-core modules using a fine-tuned LLM
A useful application of AI in bioinformatics is the automatic transformation of Snakemake workflows into Nextflow, leveraging nf-core modules and subworkflows where available. As bioinformatics pipelines become increasingly complex, the ability to... continue reading
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